HL_4V8P_048

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAACUAUGA

Length

9 nucleotides

Bulged bases

4V8P|1|A1|A|2251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_048 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2124

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V8P|1|A1|U|2249
4V8P|1|A1|A|2250
4V8P|1|A1|A|2251
4V8P|1|A1|C|2252
4V8P|1|A1|U|2253
4V8P|1|A1|A|2254
4V8P|1|A1|U|2255
4V8P|1|A1|G|2256
4V8P|1|A1|A|2257

Current chains

Chain A1

26S RRNA

Nearby chains

Chain GY

RPL37A

Chain H1

Large subunit ribosomal RNA; LSU rRNA

Chain HG

RPL30