HL_4V8P_049

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4V8P|1|A1|U|2293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_049 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0932

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V8P|1|A1|U|2287
4V8P|1|A1|C|2288
4V8P|1|A1|U|2289
4V8P|1|A1|A|2290
4V8P|1|A1|A|2291
4V8P|1|A1|U|2292
4V8P|1|A1|U|2293
4V8P|1|A1|A|2294
4V8P|1|A1|G|2295

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BJ

RPL23