HL_4V8P_060
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- ACAAGUUUU
- Length
- 9 nucleotides
- Bulged bases
- 4V8P|1|A1|C|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_060 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.1282
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
4V8P|1|A1|A|2764
4V8P|1|A1|C|2765
4V8P|1|A1|A|2766
4V8P|1|A1|A|2767
4V8P|1|A1|G|2768
4V8P|1|A1|U|2769
4V8P|1|A1|U|2770
4V8P|1|A1|U|2771
4V8P|1|A1|U|2772
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AQ
- 60S RIBOSOMAL PROTEIN L36
- Chain AU
- RPL13
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
Coloring options: