HL_4V8P_061

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_061 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1677

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8P|1|A1|A|2828
4V8P|1|A1|G|2829
4V8P|1|A1|U|2830
4V8P|1|A1|U|2831
4V8P|1|A1|C|2832
4V8P|1|A1|A|2833
4V8P|1|A1|U|2834
4V8P|1|A1|A|2835
4V8P|1|A1|U|2836

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BH

60S RIBOSOMAL PROTEIN L10

Chain GO

RPL19