HL_4V8P_066

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_066 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.16

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8P|1|A1|U|3057
4V8P|1|A1|G|3058
4V8P|1|A1|A|3059
4V8P|1|A1|A|3060
4V8P|1|A1|A|3061
4V8P|1|A1|A|3062

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AM

RIBOSOMAL PROTEIN L22

Chain BO

RPL19

Chain BW

60S RIBOSOMAL PROTEIN L31