HL_4V8P_071

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAUUUCC

Length

8 nucleotides

Bulged bases

4V8P|1|A1|U|3311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_071 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3993

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8P|1|A1|G|3306
4V8P|1|A1|A|3307
4V8P|1|A1|A|3308
4V8P|1|A1|U|3309
4V8P|1|A1|U|3310
4V8P|1|A1|U|3311
4V8P|1|A1|C|3312
4V8P|1|A1|C|3313

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AM

RIBOSOMAL PROTEIN L22