HL_4V8P_072
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_072 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.2011
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|B2|C|50
4V8P|1|B2|A|51
4V8P|1|B2|G|52
4V8P|1|B2|C|53
4V8P|1|B2|G|54
4V8P|1|B2|A|55
4V8P|1|B2|A|56
4V8P|1|B2|A|57
4V8P|1|B2|U|58
4V8P|1|B2|G|59
Current chains
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AB
- RPL39
- Chain BR
- RPL23A
- Chain BU
- RPL35
Coloring options: