HL_4V8P_075

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGUAAAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_075 not in the Motif Atlas

Geometric match to HL_5J7L_015

Geometric discrepancy: 0.2609

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8P|1|B2|G|121
4V8P|1|B2|U|122
4V8P|1|B2|G|123
4V8P|1|B2|U|124
4V8P|1|B2|A|125
4V8P|1|B2|A|126
4V8P|1|B2|A|127
4V8P|1|B2|A|128
4V8P|1|B2|A|129
4V8P|1|B2|C|130

Current chains

Chain B2

5.8S RRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BR

RPL23A