HL_4V8P_080
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAAGUGG
- Length
- 7 nucleotides
- Bulged bases
- 4V8P|1|C2|G|112, 4V8P|1|C2|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_57065.2
- Basepair signature
- cWW-R-R
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|C2|C|109
4V8P|1|C2|A|110
4V8P|1|C2|A|111
4V8P|1|C2|G|112
4V8P|1|C2|U|113
4V8P|1|C2|G|114
4V8P|1|C2|G|115
Current chains
- Chain C2
- 5.8S RRNA
Nearby chains
- Chain CR
- RPL23A
- Chain D1
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- RIBOSOMAL PROTEIN L37
- Chain DB
- RPL39
Coloring options: