3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
CAAGUGG
Length
7 nucleotides
Bulged bases
4V8P|1|C2|G|112, 4V8P|1|C2|G|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_57065.2
Basepair signature
cWW-R-R
Number of instances in this motif group
6

Unit IDs

4V8P|1|C2|C|109
4V8P|1|C2|A|110
4V8P|1|C2|A|111
4V8P|1|C2|G|112
4V8P|1|C2|U|113
4V8P|1|C2|G|114
4V8P|1|C2|G|115

Current chains

Chain C2
5.8S RRNA

Nearby chains

Chain CR
RPL23A
Chain D1
Large subunit ribosomal RNA; LSU rRNA
Chain DA
RIBOSOMAL PROTEIN L37
Chain DB
RPL39

Coloring options:

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