3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
CUUAAAUG
Length
8 nucleotides
Bulged bases
4V8P|1|D1|A|1109
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_54035.2
Basepair signature
cWW-cWW-R-tSH-R
Number of instances in this motif group
10

Unit IDs

4V8P|1|D1|C|1104
4V8P|1|D1|U|1105
4V8P|1|D1|U|1106
4V8P|1|D1|A|1107
4V8P|1|D1|A|1108
4V8P|1|D1|A|1109
4V8P|1|D1|U|1110
4V8P|1|D1|G|1111

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CM
60S RIBOSOMAL PROTEIN L5
Chain CP
60S RIBOSOMAL PROTEIN L21
Chain DT
RPL29

Coloring options:

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