Motif HL_54035.2 Version HL_54035.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_025 | 4LFB | 0.4746 | 0 | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW | |
| 2 | HL_5J7L_024 | 5J7L | 0.4654 | 0 | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | G | 1094 | U | 1095 | C | 1096 | cWW | cwW | |
| 3 | HL_4V5O_063 | 4V5O | 0.4076 | 0 | BA | SSU rRNA | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1286 | U | 1287 | C | 1288 | cWW | cwW | |
| 4 | HL_4V88_215 | 4V88 | 0.3048 | 0 | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1314 | U | 1315 | G | 1316 | cWW | cwW | |
| 5 | HL_5TBW_008 | 5TBW | 0.4337 | 2 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | A | 285 | U | 286 | G | 287 | cWW | cwW | |
| 6 | HL_5TBW_024 | 5TBW | 0.0000 | 0 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1081 | U | 1082 | G | 1083 | cWW | cwW | |
| 7 | HL_4V8P_108 | 4V8P | 0.2247 | 0 | D1 | LSU rRNA | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | A | 1109 | U | 1110 | G | 1111 | cWW | cwW | |
| 8 | HL_3R4F_003 | 3R4F | 0.3786 | 0 | A | pRNA | A | 24||||15_545 | U | 25||||15_545 | U | 26||||15_545 | G | 27||||15_545 | A | 28||||15_545 | G | 29||||15_545 | U | 30||||15_545 | U | 31||||15_545 | cWW | cwW | |
| 9 | HL_3R4F_001 | 3R4F | 0.3786 | 0 | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | G | 29 | U | 30 | U | 31 | cWW | cwW | |
| 10 | HL_3IVK_005 | 3IVK | 0.8050 | 0 | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 2 |
| CUUAAUUG | 2 |
| AUUGAGUU | 2 |
| GUUAAUUC | 1 |
| UUUGGGAAUG | 1 |
| CUUAAAUG | 1 |
| GUUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 3 |
| UUAAGU | 2 |
| UUGAGU | 2 |
| UUGGGAAU | 1 |
| UUAAAU | 1 |
| UUAAAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-R-tSH-R
- Heat map statistics
- Min 0.10 | Avg 0.47 | Max 0.93
Coloring options: