3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
UUUAAUAAAAA
Length
11 nucleotides
Bulged bases
4V8P|1|D1|A|2134, 4V8P|1|D1|A|2135, 4V8P|1|D1|U|2136, 4V8P|1|D1|A|2140
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.2
Basepair signature
cWW-tWH-tWH-R
Number of instances in this motif group
6

Unit IDs

4V8P|1|D1|U|2131
4V8P|1|D1|U|2132
4V8P|1|D1|U|2133
4V8P|1|D1|A|2134
4V8P|1|D1|A|2135
4V8P|1|D1|U|2136
4V8P|1|D1|A|2137
4V8P|1|D1|A|2138
4V8P|1|D1|A|2139
4V8P|1|D1|A|2140
4V8P|1|D1|A|2141

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CA
RPL8
Chain DA
RIBOSOMAL PROTEIN L37

Coloring options:

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