Motif HL_43613.2 Version HL_43613.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_043 | 4WF9 | 0.4342 | 4 | X | LSU rRNA | U | 1804 | U | 1805 | U | 1806 | A | 1810 | A | 1811 | A | 1812 | A | 1814 | cWW | tWH | ||
| 2 | HL_4V8P_128 | 4V8P | 0.4092 | 4 | D1 | LSU rRNA | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | ||
| 3 | HL_4V9F_047 | 4V9F | 0.1162 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH | |
| 4 | HL_5J7L_178 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH | |
| 5 | HL_4Y4O_147 | 4Y4O | 0.0646 | 4 | 2A | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH | |
| 6 | HL_5TBW_046 | 5TBW | 0.1738 | 4 | 1 | LSU rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAUCAAAAA | 1 |
| UUUAAUAAAAA | 1 |
| UCUAGUAACAA | 1 |
| UUUAUUAAAAA | 1 |
| UUUACCAAAAA | 1 |
| UCUAAUUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCAAAA | 1 |
| UUAAUAAAA | 1 |
| CUAGUAACA | 1 |
| UUAUUAAAA | 1 |
| UUACCAAAA | 1 |
| CUAAUUAAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.06 | Avg 0.25 | Max 0.46
Coloring options: