3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
UUAAACCAUAACG
Length
13 nucleotides
Bulged bases
4V8P|1|D1|A|2626, 4V8P|1|D1|C|2633
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.2
Basepair signature
cWW-tSH-tHH-tWW-R-R-R
Number of instances in this motif group
7

Unit IDs

4V8P|1|D1|U|2622
4V8P|1|D1|U|2623
4V8P|1|D1|A|2624
4V8P|1|D1|A|2625
4V8P|1|D1|A|2626
4V8P|1|D1|C|2627
4V8P|1|D1|C|2628
4V8P|1|D1|A|2629
4V8P|1|D1|U|2630
4V8P|1|D1|A|2631
4V8P|1|D1|A|2632
4V8P|1|D1|C|2633
4V8P|1|D1|G|2634

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CH
60S RIBOSOMAL PROTEIN L10
Chain CP
60S RIBOSOMAL PROTEIN L21
Chain DT
RPL29

Coloring options:

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