Motif HL_19870.2 Version HL_19870.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_138 | 4V8P | 0.1974 | 2 | D1 | LSU rRNA | U | 2622 | U | 2623 | A | 2624 | A | 2625 | C | 2627 | C | 2628 | A | 2629 | U | 2630 | A | 2631 | A | 2632 | G | 2634 | cWW | ntSH | tHH | tWW | |
| 2 | HL_5TBW_055 | 5TBW | 0.1667 | 2 | 1 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | tHH | tWW | |
| 3 | HL_4V9F_056 | 4V9F | 0.1224 | 2 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2303 | G | 2304 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW | |
| 4 | HL_4WF9_050 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | C | 2291 | U | 2292 | A | 2293 | A | 2294 | A | 2296 | G | 2297 | G | 2298 | U | 2299 | A | 2300 | A | 2301 | G | 2303 | cWW | ntSH | tHH | tWW | |
| 5 | HL_4IOA_053 | 4IOA | 0.0980 | 2 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | A | 2248 | U | 2249 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | tHH | tWW | |
| 6 | HL_4Y4O_157 | 4Y4O | 0.1002 | 2 | 2A | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | A | 2269 | G | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW | |
| 7 | HL_5J7L_187 | 5J7L | 0.1024 | 2 | DA | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | G | 2269 | A | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAAAGGUAACG | 2 |
| UUAAACCAUAACG | 1 |
| UUAAACGAUAACG | 1 |
| CGAAAAGAUAUCG | 1 |
| CCAAAAUGUAACG | 1 |
| CUAAAGAGUAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAAGGUAAC | 2 |
| UAAACCAUAAC | 1 |
| UAAACGAUAAC | 1 |
| GAAAAGAUAUC | 1 |
| CAAAAUGUAAC | 1 |
| UAAAGAGUAAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-tHH-tWW-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.22
Coloring options: