HL_4V8P_155
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20284.1
- Basepair signature
- cWW-R-R-R-R-R-R
- Number of instances in this motif group
- 10
Unit IDs
4V8P|1|E2|C|50
4V8P|1|E2|A|51
4V8P|1|E2|G|52
4V8P|1|E2|C|53
4V8P|1|E2|G|54
4V8P|1|E2|A|55
4V8P|1|E2|A|56
4V8P|1|E2|A|57
4V8P|1|E2|U|58
4V8P|1|E2|G|59
Current chains
- Chain E2
- 5.8S RRNA
Nearby chains
- Chain ER
- RPL23A
- Chain EU
- RPL35
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
- Chain FA
- RIBOSOMAL PROTEIN L37
- Chain FB
- RPL39
Coloring options: