Motif HL_20284.1 Version HL_20284.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 4-5 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V91_075 | 4V91 | 0.4266 | 1 | 4 | 5.8S rRNA | C | 47 | A | 48 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |||||
| 2 | HL_3J7P_073 | 3J7P | 0.4337 | 1 | 8 | 5.8S rRNA | C | 47 | A | 48 | C | 50 | U | 51 | A | 52 | G | 53 | C | 54 | U | 55 | G | 56 | cWW | |||||
| 3 | HL_4V8P_155 | 4V8P | 0.3156 | 1 | E2 | 5.8S rRNA | C | 50 | A | 51 | C | 53 | G | 54 | A | 55 | A | 56 | A | 57 | U | 58 | G | 59 | cWW | |||||
| 4 | HL_5FDU_001 | 5FDU | 0.2298 | 1 | 1A | LSU rRNA | U | 58 | G | 59 | C | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | ncSH | ncSH | |||
| 5 | HL_4IOA_001 | 4IOA | 0.0000 | 1 | Pseudoknot with intercalation (H) | X | LSU rRNA | C | 58 | G | 59 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |||
| 6 | HL_3J7P_060 | 3J7P | 0.8045 | 2 | 5 | LSU rRNA | U | 4352 | U | 4353 | G | 4356 | G | 4357 | U | 4358 | U | 4359 | U | 4360 | U | 4361 | A | 4362 | ncWW | ncwW | ||||
| 7 | HL_5AJ0_064 | 5AJ0 | 0.8162 | 2 | A2 | LSU rRNA | U | 4314 | U | 4315 | G | 4318 | G | 4319 | U | 4320 | U | 4321 | U | 4322 | U | 4323 | A | 4324 | cWW | ncwW | ||||
| 8 | HL_2JLT_001 | 2JLT | 0.7926 | 1 | A | R06 | G | 5 | G | 6 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | ||||
| 9 | HL_3J9W_036 | 3J9W | 0.9385 | 1 | BA | LSU rRNA | G | 59 | G | 60 | C | 62 | G | 63 | A | 64 | A | 65 | C | 66 | A | 67 | C | 68 | cWW | |||||
| 10 | HL_5J7L_134 | 5J7L | 0.8058 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGAAAUG | 2 |
| UUUGGGUUUUA | 2 |
| CAGCUAGCUG | 1 |
| UGGCUACCUG | 1 |
| CGAUUACCUG | 1 |
| GGUCCCAGAC | 1 |
| GGACGAACAC | 1 |
| UGCUAAUCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGAAAU | 2 |
| UUGGGUUUU | 2 |
| AGCUAGCU | 1 |
| GGCUACCU | 1 |
| GAUUACCU | 1 |
| GUCCCAGA | 1 |
| GACGAACA | 1 |
| GCUAAUCU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Pseudoknot with intercalation (H) (1)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.18 | Avg 0.66 | Max 1.06
Coloring options: