HL_4V8P_158
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUGUAAAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56205.1
- Basepair signature
- cWW-R-tSH-R-R-R-R
- Number of instances in this motif group
- 26
Unit IDs
4V8P|1|E2|G|121
4V8P|1|E2|U|122
4V8P|1|E2|G|123
4V8P|1|E2|U|124
4V8P|1|E2|A|125
4V8P|1|E2|A|126
4V8P|1|E2|A|127
4V8P|1|E2|A|128
4V8P|1|E2|A|129
4V8P|1|E2|C|130
Current chains
- Chain E2
- 5.8S RRNA
Nearby chains
- Chain ER
- RPL23A
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: