HL_4V8P_160

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGGGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_160 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.1

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|E3|G|86
4V8P|1|E3|G|87
4V8P|1|E3|G|88
4V8P|1|E3|G|89
4V8P|1|E3|A|90
4V8P|1|E3|C|91

Current chains

Chain E3

5S RRNA

Nearby chains

Chain EH

60S RIBOSOMAL PROTEIN L10

Chain F1

Large subunit ribosomal RNA; LSU rRNA

Chain FX

RPL18A