HL_4V8P_176

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGGAAAAAC

Length

10 nucleotides

Bulged bases

4V8P|1|F1|A|716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22971.1

Basepair signature

cWW-cWW-tSH-R-R-R

Number of instances in this motif group

2

Unit IDs

4V8P|1|F1|G|710
4V8P|1|F1|U|711
4V8P|1|F1|G|712
4V8P|1|F1|G|713
4V8P|1|F1|A|714
4V8P|1|F1|A|715
4V8P|1|F1|A|716
4V8P|1|F1|A|717
4V8P|1|F1|A|718
4V8P|1|F1|C|719

Current chains

Chain F1

26S RRNA

Nearby chains

Chain E2

5.8S ribosomal RNA; 5.8S rRNA

Chain EC

RPL4

Chain EL

RIBOSOMAL PROTEIN L15

Chain ES

RPL26

Chain FU

RPL13