HL_4V8P_196

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V8P|1|F1|U|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55197.1

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

15

Unit IDs

4V8P|1|F1|G|1704
4V8P|1|F1|U|1705
4V8P|1|F1|U|1706
4V8P|1|F1|A|1707
4V8P|1|F1|U|1708
4V8P|1|F1|C|1709
4V8P|1|F1|U|1710
4V8P|1|F1|U|1711
4V8P|1|F1|U|1712

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EO

RPL19

Chain FM

RIBOSOMAL PROTEIN L22