HL_4V8P_230

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

4V8P|1|F1|U|3264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57089.1

Basepair signature

cWW-cSW-R-R-R-R

Number of instances in this motif group

13

Unit IDs

4V8P|1|F1|G|3263
4V8P|1|F1|U|3264
4V8P|1|F1|A|3265
4V8P|1|F1|G|3266
4V8P|1|F1|A|3267
4V8P|1|F1|C|3268
4V8P|1|F1|G|3269
4V8P|1|F1|A|3270
4V8P|1|F1|C|3271

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EB

RIBOSOMAL PROTEIN L3

Chain EQ

RPL17