HL_4V8P_234

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAAGUGG

Length

7 nucleotides

Bulged bases

4V8P|1|G2|G|112, 4V8P|1|G2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_234 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.3148

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8P|1|G2|C|109
4V8P|1|G2|A|110
4V8P|1|G2|A|111
4V8P|1|G2|G|112
4V8P|1|G2|U|113
4V8P|1|G2|G|114
4V8P|1|G2|G|115

Current chains

Chain G2

5.8S RRNA

Nearby chains

Chain GR

RPL23A

Chain H1

Large subunit ribosomal RNA; LSU rRNA

Chain HA

RIBOSOMAL PROTEIN L37

Chain HB

RPL39