HL_4V8P_244

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

4V8P|1|H1|G|218, 4V8P|1|H1|A|219, 4V8P|1|H1|C|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_244 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1294

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

4V8P|1|H1|G|216
4V8P|1|H1|U|217
4V8P|1|H1|G|218
4V8P|1|H1|A|219
4V8P|1|H1|C|220
4V8P|1|H1|A|221
4V8P|1|H1|A|222
4V8P|1|H1|C|223
4V8P|1|H1|C|224

Current chains

Chain H1

26S RRNA

Nearby chains

Chain G2

5.8S ribosomal RNA; 5.8S rRNA

Chain GC

RPL4

Chain GS

RPL26