HL_4V8P_264
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_264 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.227
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|H1|G|1175
4V8P|1|H1|G|1176
4V8P|1|H1|A|1177
4V8P|1|H1|U|1178
4V8P|1|H1|G|1179
4V8P|1|H1|A|1180
4V8P|1|H1|A|1181
4V8P|1|H1|C|1182
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G3
- 5S ribosomal RNA; 5S rRNA
- Chain GV
- 60S RIBOSOMAL PROTEIN L7
- Chain GX
- 60S RIBOSOMAL PROTEIN L32
- Chain HH
- RPL35A
Coloring options: