HL_4V8P_265
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAAAUGCGAGG
- Length
- 11 nucleotides
- Bulged bases
- 4V8P|1|H1|A|1376, 4V8P|1|H1|G|1379, 4V8P|1|H1|C|1380, 4V8P|1|H1|G|1381, 4V8P|1|H1|G|1383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_265 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3176
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V8P|1|H1|C|1374
4V8P|1|H1|A|1375
4V8P|1|H1|A|1376
4V8P|1|H1|A|1377
4V8P|1|H1|U|1378
4V8P|1|H1|G|1379
4V8P|1|H1|C|1380
4V8P|1|H1|G|1381
4V8P|1|H1|A|1382
4V8P|1|H1|G|1383
4V8P|1|H1|G|1384
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GC
- RPL4
- Chain GN
- RPL18
- Chain GV
- 60S RIBOSOMAL PROTEIN L7
- Chain GX
- 60S RIBOSOMAL PROTEIN L32
- Chain HE
- RPL6
- Chain HO
- RPL28
Coloring options: