HL_4V8P_267
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_267 not in the Motif Atlas
- Homologous match to HL_5TBW_031
- Geometric discrepancy: 0.0979
- The information below is about HL_5TBW_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V8P|1|H1|A|1488
4V8P|1|H1|U|1489
4V8P|1|H1|G|1490
4V8P|1|H1|A|1491
4V8P|1|H1|G|1492
4V8P|1|H1|A|1493
4V8P|1|H1|A|1494
4V8P|1|H1|C|1495
4V8P|1|H1|U|1496
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GO
- RPL19
- Chain GQ
- RPL17
- Chain GW
- 60S RIBOSOMAL PROTEIN L31
Coloring options: