HL_4V8P_269

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUUAACUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_269 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.234

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V8P|1|H1|G|1569
4V8P|1|H1|U|1570
4V8P|1|H1|U|1571
4V8P|1|H1|A|1572
4V8P|1|H1|A|1573
4V8P|1|H1|C|1574
4V8P|1|H1|U|1575
4V8P|1|H1|C|1576

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GF

RPL7A

Chain GL

RIBOSOMAL PROTEIN L15

Chain HA

RIBOSOMAL PROTEIN L37