HL_4V8P_284

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

ACGCAAUU

Length

8 nucleotides

Bulged bases

4V8P|1|H1|C|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_284 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3464

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8P|1|H1|A|2214
4V8P|1|H1|C|2215
4V8P|1|H1|G|2216
4V8P|1|H1|C|2217
4V8P|1|H1|A|2218
4V8P|1|H1|A|2219
4V8P|1|H1|U|2220
4V8P|1|H1|U|2221

Current chains

Chain H1

26S RRNA

Nearby chains

Chain HC

60S RIBOSOMAL PROTEIN L36A

Chain HQ

60S RIBOSOMAL PROTEIN L36