HL_4V8P_295

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUCAGUAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_295 not in the Motif Atlas

Homologous match to HL_5TBW_058

Geometric discrepancy: 0.1552

The information below is about HL_5TBW_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8P|1|H1|U|2713
4V8P|1|H1|U|2714
4V8P|1|H1|C|2715
4V8P|1|H1|A|2716
4V8P|1|H1|G|2717
4V8P|1|H1|U|2718
4V8P|1|H1|A|2719
4V8P|1|H1|G|2720
4V8P|1|H1|G|2721

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GK

60S RIBOSOMAL PROTEIN L27A

Chain GN

RPL18

Chain GP

60S RIBOSOMAL PROTEIN L21

Chain HC

60S RIBOSOMAL PROTEIN L36A