HL_4V8P_299

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4V8P|1|H1|G|2886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_299 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0827

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V8P|1|H1|A|2885
4V8P|1|H1|G|2886
4V8P|1|H1|C|2887
4V8P|1|H1|A|2888
4V8P|1|H1|G|2889
4V8P|1|H1|A|2890
4V8P|1|H1|A|2891
4V8P|1|H1|U|2892

Current chains

Chain H1

26S RRNA

Nearby chains

Chain BO

RPL19

Chain GE

60S RIBOSOMAL PROTEIN L9

Chain HK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40