HL_4V8P_306

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_306 not in the Motif Atlas

Geometric match to HL_4LGT_001

Geometric discrepancy: 0.2151

The information below is about HL_4LGT_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8P|1|H1|C|3202
4V8P|1|H1|G|3203
4V8P|1|H1|A|3204
4V8P|1|H1|A|3205
4V8P|1|H1|A|3206
4V8P|1|H1|A|3207
4V8P|1|H1|A|3208
4V8P|1|H1|G|3209

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GB

RIBOSOMAL PROTEIN L3

Chain GI

60S RIBOSOMAL PROTEIN L13A