HL_4V8P_316
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AUCCCAUUCGAACU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_316 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.1071
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|E3|A|32
4V8P|1|E3|U|33
4V8P|1|E3|C|34
4V8P|1|E3|C|35
4V8P|1|E3|C|36
4V8P|1|E3|A|37
4V8P|1|E3|U|38
4V8P|1|E3|U|39
4V8P|1|E3|C|40
4V8P|1|E3|G|41
4V8P|1|E3|A|42
4V8P|1|E3|A|43
4V8P|1|E3|C|44
4V8P|1|E3|U|45
Current chains
- Chain E3
- 5S RRNA
Nearby chains
- Chain ED
- 60S RIBOSOMAL PROTEIN L11
- Chain EM
- 60S RIBOSOMAL PROTEIN L5
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: