HL_4V8P_331

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_331 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3998

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8P|1|H1|C|1594
4V8P|1|H1|A|1595
4V8P|1|H1|U|1596
4V8P|1|H1|U|1597
4V8P|1|H1|C|1598
4V8P|1|H1|G|1599

Current chains

Chain H1

26S RRNA

Nearby chains

Chain G2

5.8S ribosomal RNA; 5.8S rRNA

Chain GR

RPL23A