HL_4V8Q_052

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V8Q|1|AA|G|2207, 4V8Q|1|AA|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_052 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.195

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V8Q|1|AA|C|2205
4V8Q|1|AA|G|2206
4V8Q|1|AA|G|2207
4V8Q|1|AA|A|2208
4V8Q|1|AA|U|2218
4V8Q|1|AA|G|2219

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L28

Chain AD

50S RIBOSOMAL PROTEIN L2