HL_4V8Q_066

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V8Q|1|AA|G|2751, 4V8Q|1|AA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_066 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1107

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V8Q|1|AA|C|2745
4V8Q|1|AA|U|2746
4V8Q|1|AA|G|2747
4V8Q|1|AA|A|2748
4V8Q|1|AA|A|2749
4V8Q|1|AA|A|2750
4V8Q|1|AA|G|2751
4V8Q|1|AA|C|2752
4V8Q|1|AA|A|2753
4V8Q|1|AA|U|2754
4V8Q|1|AA|C|2755
4V8Q|1|AA|U|2756
4V8Q|1|AA|A|2757
4V8Q|1|AA|A|2758
4V8Q|1|AA|G|2759

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A9

50S RIBOSOMAL PROTEIN L36

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain AN

50S RIBOSOMAL PROTEIN L13