HL_4V8Q_075

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4V8Q|1|BA|U|189|||F, 4V8Q|1|BA|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_075 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.245

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8Q|1|BA|C|189|||B
4V8Q|1|BA|C|189|||C
4V8Q|1|BA|C|189|||D
4V8Q|1|BA|U|189|||E
4V8Q|1|BA|U|189|||F
4V8Q|1|BA|G|189|||G
4V8Q|1|BA|G|189|||H
4V8Q|1|BA|G|189|||I

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S RIBOSOMAL PROTEIN S17