HL_4V8T_027
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 4V8T|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8T_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3825
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|C|1239
4V8T|1|5|A|1240
4V8T|1|5|U|1241
4V8T|1|5|G|1242
4V8T|1|5|G|1243
4V8T|1|5|A|1244
4V8T|1|5|A|1245
4V8T|1|5|G|1246
4V8T|1|5|U|1247
4V8T|1|5|C|1248
4V8T|1|5|G|1249
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain K
- 60S RIBOSOMAL PROTEIN L12
Coloring options: