HL_4V8T_061
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 4V8T|1|5|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8T_061 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.0605
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
4V8T|1|5|C|2776
4V8T|1|5|G|2777
4V8T|1|5|G|2778
4V8T|1|5|A|2779
4V8T|1|5|A|2780
4V8T|1|5|U|2781
4V8T|1|5|U|2782
4V8T|1|5|U|2783
4V8T|1|5|G|2784
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN L13-A
- Chain a
- 60S RIBOSOMAL PROTEIN L28
- Chain i
- 60S RIBOSOMAL PROTEIN L36-A
- Chain o
- 60S RIBOSOMAL PROTEIN L42-A
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