HL_4V8X_021
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 4V8X|1|AA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8X_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.142
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8X|1|AA|G|963
4V8X|1|AA|A|964
4V8X|1|AA|A|965
4V8X|1|AA|G|966
4V8X|1|AA|C|967
4V8X|1|AA|A|968
4V8X|1|AA|A|969
4V8X|1|AA|C|970
4V8X|1|AA|G|971
4V8X|1|AA|C|972
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AN
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM
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