HL_4V8X_171

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

4V8X|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_171 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3846

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8X|1|DA|G|883
4V8X|1|DA|C|884
4V8X|1|DA|C|885
4V8X|1|DA|C|886
4V8X|1|DA|A|887
4V8X|1|DA|C|888
4V8X|1|DA|C|889
4V8X|1|DA|A|890
4V8X|1|DA|G|892
4V8X|1|DA|C|893

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CZ

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM