HL_4V8Y_008
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4V8Y|1|B2|G|337
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_008 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.0699
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
4V8Y|1|B2|G|330
4V8Y|1|B2|A|331
4V8Y|1|B2|U|332
4V8Y|1|B2|A|333
4V8Y|1|B2|G|334
4V8Y|1|B2|U|335
4V8Y|1|B2|G|336
4V8Y|1|B2|G|337
4V8Y|1|B2|C|338
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
Coloring options: