HL_4V8Y_040

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

4V8Y|1|B5|U|133, 4V8Y|1|B5|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_040 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.3134

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V8Y|1|B5|C|132
4V8Y|1|B5|U|133
4V8Y|1|B5|U|134
4V8Y|1|B5|C|135
4V8Y|1|B5|G|136

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain Bh

60S RIBOSOMAL PROTEIN L35-B