HL_4V8Y_044

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

4V8Y|1|B5|G|283, 4V8Y|1|B5|A|284, 4V8Y|1|B5|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_044 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.062

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8Y|1|B5|U|278
4V8Y|1|B5|U|279
4V8Y|1|B5|U|280
4V8Y|1|B5|G|281
4V8Y|1|B5|G|282
4V8Y|1|B5|G|283
4V8Y|1|B5|A|284
4V8Y|1|B5|A|285
4V8Y|1|B5|U|286
4V8Y|1|B5|G|287

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain BQ

60S RIBOSOMAL PROTEIN L18-A

Chain Ba

60S RIBOSOMAL PROTEIN L28

Chain Bo

60S RIBOSOMAL PROTEIN L42-A