HL_4V8Y_060

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

4V8Y|1|B5|U|1081

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_060 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.0902

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8Y|1|B5|C|1076
4V8Y|1|B5|U|1077
4V8Y|1|B5|U|1078
4V8Y|1|B5|A|1079
4V8Y|1|B5|A|1080
4V8Y|1|B5|U|1081
4V8Y|1|B5|U|1082
4V8Y|1|B5|G|1083

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21-A

Chain Bb

60S RIBOSOMAL PROTEIN L29