HL_4V8Y_082

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

4V8Y|1|B5|A|2138, 4V8Y|1|B5|A|2139, 4V8Y|1|B5|U|2140, 4V8Y|1|B5|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_082 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.0482

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V8Y|1|B5|U|2135
4V8Y|1|B5|C|2136
4V8Y|1|B5|U|2137
4V8Y|1|B5|A|2138
4V8Y|1|B5|A|2139
4V8Y|1|B5|U|2140
4V8Y|1|B5|U|2141
4V8Y|1|B5|A|2142
4V8Y|1|B5|A|2143
4V8Y|1|B5|A|2144
4V8Y|1|B5|A|2145

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain Bj

60S RIBOSOMAL PROTEIN L37-A