HL_4V8Z_003

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

4V8Z|1|B2|U|158, 4V8Z|1|B2|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1099

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8Z|1|B2|G|154
4V8Z|1|B2|U|155
4V8Z|1|B2|A|156
4V8Z|1|B2|A|157
4V8Z|1|B2|U|158
4V8Z|1|B2|U|159
4V8Z|1|B2|C|160

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2