HL_4V8Z_020
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_020 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.104
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
4V8Z|1|B2|A|900
4V8Z|1|B2|G|901
4V8Z|1|B2|G|902
4V8Z|1|B2|U|903
4V8Z|1|B2|G|904
4V8Z|1|B2|A|905
4V8Z|1|B2|A|906
4V8Z|1|B2|A|907
4V8Z|1|B2|U|908
4V8Z|1|B2|U|909
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A0
- 40S RIBOSOMAL PROTEIN S26-A
- Chain AO
- 40S RIBOSOMAL PROTEIN S14-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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