HL_4V8Z_023
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUUUUUUAAUGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_023 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3814
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B2|U|1054
4V8Z|1|B2|U|1055
4V8Z|1|B2|U|1056
4V8Z|1|B2|U|1057
4V8Z|1|B2|U|1058
4V8Z|1|B2|U|1059
4V8Z|1|B2|U|1060
4V8Z|1|B2|A|1061
4V8Z|1|B2|A|1062
4V8Z|1|B2|U|1063
4V8Z|1|B2|G|1064
4V8Z|1|B2|A|1065
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- 40S RIBOSOMAL PROTEIN S27-A
- Chain AB
- 40S RIBOSOMAL PROTEIN S1-A
- Chain AR
- 40S RIBOSOMAL PROTEIN S17-A
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