HL_4V8Z_043
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V8Z|1|B5|G|218, 4V8Z|1|B5|A|219, 4V8Z|1|B5|G|220
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_043 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.0643
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
4V8Z|1|B5|G|216
4V8Z|1|B5|U|217
4V8Z|1|B5|G|218
4V8Z|1|B5|A|219
4V8Z|1|B5|G|220
4V8Z|1|B5|A|221
4V8Z|1|B5|A|222
4V8Z|1|B5|U|223
4V8Z|1|B5|C|224
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
Coloring options: